Our research program has two major focuses: 1) host-bacterial symbiosis; and 2) the 'design' of tissues that interact with light. The experimental strategy for both areas of research relies on methods that have been developed for the study of the squid-vibrio association over the past 30+ years. The projects on symbiosis have centered on the development of the squid-vibrio association as a model for the establishment and maintenance of the chronic colonization of animal epithelia by Gram-negative bacteria. This type of association is perhaps the most common in the animal kingdom. Using this model, we explore critical questions about the phenomenon of beneficial animal-microbe associations, including: 1) With each generation, how does the animal harvest the often-rare symbiont from the environment upon birth or hatching? 2) How do the host and symbiont recognize one another to establish a specific association? 3) How does the bacterial partner influence the developmental program of the host? 4) How is stability achieved and maintained in the mature association? 5) What are the principal differences between how an animal interacts with pathogenic bacterial species and beneficial ones?
In our second research focus, the lab studies the 'design' of tissues that interact with light. The squid-vibrio symbiosis is an association in which luminous bacteria live in the animal host tissues. In such systems, evolutionary tinkering has led to the formation of an organ that bears remarkable similarity to the eye, with cornea, lens, choroid, iris, and tapetum analogues. We have studied this convergence at the biochemical and molecular levels. The light organ expresses genes associated with eye specification during development, and the organ produces the principal proteins of the visual transduction cascade. Recently we showed that the colonization of the light organ not only affects gene expression of the light-organ tissues, but also influences gene expression in the eye, a behavior that is abrogated by colonization of the organ with mutants of the symbiont defective in light production. As part of this effort, our laboratory discovered the first protein-based animal reflector, which forms a tapetum-like structure in the light organ. This protein, which we called reflectin, is now studied by several labs for its properties as a strong proton conductor and an unusual stability biomolecule, features being exploited for applications in industry and biomedicine. Currently, the lab is collaborating with engineers and imagers to define the cell biology of reflector-platelet synthesis and the influence of symbiosis on this process.
Publications
McFall-Ngai (2024) Dropping in on the conversation. Invited contribution to 50th Anniversary of Cell. Cell (In Press).
Ling, F et al. (2024) Flow physics guides morphology of ciliated organs. Nature Physics (In Press).
McFall-Ngai, M (2024) Perspective - Symbiosis takes front and center in biology. PLoS Biol (Contribution to a special collection of Perspectives on symbiosis) 22:e3002571.
Yang, L et al. (2024) Bacterial growth dynamics in a rhythmic symbiosis. Mol Biol Cell 10:mbcE24010044.
Bosch, TCG et al. (2024) The potential importance of the built-environment microbiome and its impact on human health. Proc National Acad Sci USA 121:e2313971121.
Tropini, C (2023) Time to rethink academic publishing: the peer reviewer crises. mBio 17:e0109123.
Rouressol, L et al. (2023) Emergence of novel genomic regulatory regions associated with light-organ development in the bobtail squid. iScience 26:107091.
Essock-Burns et al. (2023) Maturation state of colonization sites promotes symbiotic resiliency in the Euprymna scolopes-Vibrio fischeri partnership. Microbiome 11:68.
Helena Mannochio-Russo et al. (2023) Microbiomes and metabolomes of dominant coral reef primary producers illustrate a potential role for immunolipids in marine symbioses. Commun Biol 6:896.
Yue, X et al. (2023) The mud-dwelling clam Meretrix petechialis secretes endogenously synthesized erythromycin. Proc Natl Acad Sci 119:e2214150119.
Amend, AS et al. (2022) A ridge-to-reef ecosystem microbial census reveals environmental reservoirs for animal and plant microbiomes. Proc Natl Acad Sci USA 119: e2204146119.
McFall-Ngai, M (2022) Building a career in during a revolution in biology. Nat Microbiol 7:347-348.
Lynch, JB et al. (2022) Transitioning to confined spaces impacts bacterial swimming and escape response. Biophys J 121:2653-2662